Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps-assembly protein lptd | DD563_02060 | Not Available | Negative | 420613 - 422811 | 80854.8 |
| lps export abc transporter permease lptg | DD563_02065 | Not Available | Negative | 422820 - 423911 | 40109.4 |
| lps export abc transporter permease lptf | DD563_02070 | Not Available | Negative | 423908 - 425023 | 40614.9 |
| leucyl aminopeptidase | DD563_02075 | Not Available | Positive | 425262 - 426734 | 51072.1 |
| dna polymerase iii subunit chi | DD563_02080 | Not Available | Positive | 426734 - 427201 | 16738.8 |
| tigr02281 family clan aa aspartic protease | DD563_02085 | Not Available | Negative | 427212 - 427793 | 20823.1 |
| marc family transcriptional regulator | DD563_02090 | Not Available | Negative | 427845 - 428465 | 21740.5 |
| glycosyl transferase family 1 | DD563_02095 | Not Available | Negative | 428503 - 430347 | 67652.7 |
| nucleoside-diphosphate kinase | DD563_02100 | Not Available | Positive | 430483 - 430905 | 14960.7 |
| succinate--coa ligase subunit alpha | DD563_02105 | Not Available | Negative | 431372 - 432253 | 30303.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
