Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| disulfide bond formation protein b | DD563_02010 | Not Available | Negative | 410215 - 410682 | 15773.6 |
| cytochrome b | DD563_02015 | Not Available | Negative | 410682 - 411260 | 21265.0 |
| Trna-leu | Not Available | Not Available | Positive | 411444 - 411527 | Not Available |
| hypothetical protein | DD563_02025 | Not Available | Positive | 411518 - 411757 | 9188.31 |
| type i secretion protein | DD563_02030 | Not Available | Positive | 412420 - 415905 | 117515.0 |
| type i secretion protein | DD563_02035 | Not Available | Positive | 416291 - 416878 | 21175.6 |
| hypothetical protein | DD563_02040 | Not Available | Negative | 416897 - 417490 | 21062.7 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase | DD563_02045 | Not Available | Negative | 417487 - 418326 | 29990.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DD563_02050 | Not Available | Negative | 418323 - 419297 | 33760.0 |
| peptidylprolyl isomerase | DD563_02055 | Not Available | Negative | 419297 - 420607 | 47244.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
