Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glxa family transcriptional regulator | DD563_01960 | Not Available | Negative | 400196 - 401224 | 37433.9 |
| glycine/betaine abc transporter substrate-binding protein | DD563_01965 | Not Available | Positive | 401325 - 402275 | 33738.6 |
| abc transporter atp-binding protein | DD563_01970 | Not Available | Positive | 402285 - 403337 | 38260.2 |
| glycine/betaine abc transporter permease | DD563_01975 | Not Available | Positive | 403436 - 405406 | 69591.6 |
| rna polymerase subunit sigma-24 | DD563_01980 | Not Available | Negative | 405412 - 405930 | 18565.6 |
| calcium-binding protein | DD563_01985 | Not Available | Positive | 406223 - 406477 | 8538.96 |
| ornithine cyclodeaminase | DD563_01990 | Not Available | Negative | 406605 - 407657 | 38046.7 |
| arginase | DD563_01995 | Not Available | Negative | 407679 - 408608 | 32787.2 |
| asnc family transcriptional regulator | DD563_02000 | Not Available | Positive | 408724 - 409152 | 15479.7 |
| hypothetical protein | DD563_02005 | Not Available | Negative | 409169 - 410182 | 38924.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
