Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase | DD563_01910 | Not Available | Positive | 389287 - 391794 | 92818.9 |
| rida family protein | DD563_01915 | Not Available | Negative | 391905 - 392282 | 13690.4 |
| molybdopterin synthase sulfur carrier subunit | DD563_01920 | Not Available | Negative | 392487 - 392732 | 8585.53 |
| oxidoreductase | DD563_01925 | Not Available | Negative | 392745 - 394988 | 78342.2 |
| ferredoxin | DD563_01930 | Not Available | Negative | 394990 - 395466 | 16606.0 |
| oxidoreductase | DD563_01935 | Not Available | Negative | 395463 - 396335 | 29710.3 |
| 3-hydroxyacyl-coa dehydrogenase | DD563_01940 | Not Available | Negative | 396489 - 397427 | 33048.4 |
| short-chain dehydrogenase | DD563_01945 | Not Available | Negative | 397427 - 398164 | 25416.4 |
| short-chain dehydrogenase | DD563_01950 | Not Available | Negative | 398175 - 398966 | 27875.0 |
| ring-hydroxylating oxygenase subunit alpha | DD563_01955 | Not Available | Negative | 398963 - 400111 | 42958.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
