Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pelagicola sp. LXJ1103
Accession NumberQFAR00000000.1
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | DD563_00060 | Not Available | - | 9737 - 11122 | 52279.7 |
| hypothetical protein | DD563_00065 | Not Available | + | 11595 - 12416 | 30085.2 |
| fosx/fose/fosi family fosfomycin resistance thiol transferase | DD563_00070 | Not Available | + | 13435 - 13857 | 16225.2 |
| hypothetical protein | DD563_00075 | Not Available | - | 13824 - 14441 | 23337.1 |
| vit family protein | DD563_00080 | Not Available | - | 15259 - 15960 | 23293.3 |
| fad:protein fmn transferase | DD563_00085 | Not Available | - | 15997 - 16977 | 34443.8 |
| n-acetylglucosamine transferase | DD563_00090 | Not Available | - | 16958 - 19165 | 78396.0 |
| duf2271 domain-containing protein | DD563_00095 | Not Available | - | 19178 - 19648 | 16341.3 |
| cytochrome b | DD563_00105 | Not Available | - | 20247 - 20906 | 23472.1 |
| pepsy domain-containing protein | DD563_00110 | Not Available | - | 20899 - 21183 | 10627.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.