Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_01805 | Not Available | Negative | 371332 - 372060 | 25452.3 |
| rna polymerase subunit sigma-70 | DD563_01810 | Not Available | Negative | 372057 - 372572 | 19679.0 |
| cupin domain-containing protein | DD563_01815 | Not Available | Positive | 372714 - 373157 | 15995.1 |
| alpha/beta hydrolase | DD563_01820 | Not Available | Positive | 373177 - 374022 | 30681.7 |
| cupin domain-containing protein | DD563_01825 | Not Available | Positive | 374019 - 374531 | 18772.2 |
| flavin-dependent oxidoreductase | DD563_01830 | Not Available | Positive | 374528 - 375772 | 45565.9 |
| abc transporter substrate-binding protein | DD563_01835 | Not Available | Positive | 375883 - 377064 | 42052.4 |
| branched-chain amino acid abc transporter permease | DD563_01840 | Not Available | Positive | 377150 - 378076 | 32364.5 |
| branched-chain amino acid abc transporter permease | DD563_01845 | Not Available | Positive | 378076 - 379017 | 33099.5 |
| abc transporter atp-binding protein | DD563_01850 | Not Available | Positive | 379014 - 379760 | 25824.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
