Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate aminotransferase family protein | DD563_01750 | Not Available | Positive | 356982 - 358328 | 47236.6 |
| hypothetical protein | DD563_01755 | Not Available | Positive | 358346 - 359170 | 28168.3 |
| na/pi cotransporter | DD563_01760 | Not Available | Positive | 359198 - 360880 | 60709.2 |
| putative 2-aminoethylphosphonate abc transporter permease subunit | DD563_01765 | Not Available | Negative | 360884 - 362911 | 74082.9 |
| putative 2-aminoethylphosphonate abc transporter atp-binding protein | DD563_01770 | Not Available | Negative | 362908 - 364044 | 41240.6 |
| putative 2-aminoethylphosphonate abc transporter substrate-binding protein | DD563_01775 | Not Available | Negative | 364149 - 365168 | 36399.7 |
| abc transporter atp-binding protein | DD563_01780 | Not Available | Positive | 365376 - 366035 | 23022.7 |
| abc transporter permease | DD563_01785 | Not Available | Positive | 366032 - 368416 | 84993.7 |
| iron abc transporter permease | DD563_01790 | Not Available | Positive | 368406 - 369449 | 37675.4 |
| molybdopterin containing oxidoreductase | DD563_01795 | Not Available | Positive | 369573 - 370862 | 46820.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
