Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_01700 | Not Available | Positive | 346542 - 347096 | 21356.5 |
| methyltetrahydrofolate--corrinoid methyltransferase | DD563_01705 | Not Available | Negative | 347308 - 348366 | 37421.3 |
| 5,10-methylenetetrahydrofolate reductase | DD563_01710 | Not Available | Negative | 348388 - 349320 | 33264.9 |
| hypothetical protein | DD563_01715 | Not Available | Negative | 349380 - 349676 | 10812.8 |
| exopolyphosphatase | DD563_01720 | Not Available | Positive | 349940 - 351052 | 40519.8 |
| 23s rrna methyltransferase | DD563_01725 | Not Available | Positive | 351052 - 351789 | 26573.8 |
| lysr family transcriptional regulator | DD563_01730 | Not Available | Negative | 352028 - 352876 | 30954.2 |
| 2-aminoethylphosphonate--pyruvate transaminase | DD563_01735 | Not Available | Positive | 352997 - 354184 | 42392.1 |
| phosphonoacetate hydrolase | DD563_01740 | Not Available | Positive | 354236 - 355480 | 45400.1 |
| phosphonoacetaldehyde dehydrogenase | DD563_01745 | Not Available | Positive | 355477 - 356925 | 52645.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
