Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anthranilate synthase component i | DD563_01650 | Not Available | Negative | 334151 - 335662 | 54375.5 |
| peptidylprolyl isomerase | DD563_01655 | Not Available | Negative | 335690 - 337537 | 65899.2 |
| aminotransferase | DD563_01660 | Not Available | Negative | 337598 - 338803 | 43455.3 |
| xanthine phosphoribosyltransferase | DD563_01665 | Not Available | Negative | 338863 - 339360 | 18201.9 |
| enoyl-[acyl-carrier-protein] reductase fabi | DD563_01670 | Not Available | Negative | 339401 - 340213 | 29133.9 |
| pyridoxamine 5'-phosphate oxidase | DD563_01675 | Not Available | Positive | 340212 - 340934 | 27069.1 |
| dna-binding protein | DD563_01680 | Not Available | Positive | 341062 - 341616 | 19635.2 |
| hypothetical protein | DD563_01685 | Not Available | Positive | 341631 - 342068 | 15636.7 |
| Trna-pro | Not Available | Not Available | Positive | 342113 - 342189 | Not Available |
| vitamin b12-dependent ribonucleotide reductase | DD563_01695 | Not Available | Positive | 342795 - 346472 | 133018.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
