Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| competence protein | DD563_01600 | Not Available | Positive | 324042 - 326144 | 73874.4 |
| repressor lexa | DD563_01605 | Not Available | Negative | 326138 - 326839 | 25300.7 |
| molybdopterin molybdenumtransferase moea | DD563_01610 | Not Available | Negative | 326921 - 328093 | 39967.6 |
| cyclic pyranopterin monophosphate synthase moac | DD563_01615 | Not Available | Negative | 328090 - 328566 | 16440.1 |
| indole-3-glycerol phosphate synthase trpc | DD563_01620 | Not Available | Negative | 328566 - 329381 | 29417.3 |
| anthranilate phosphoribosyltransferase | DD563_01625 | Not Available | Negative | 329378 - 330400 | 34977.8 |
| aminodeoxychorismate/anthranilate synthase component ii | DD563_01630 | Not Available | Negative | 330397 - 330978 | 20576.9 |
| hypothetical protein | DD563_01635 | Not Available | Positive | 331141 - 332640 | 51077.3 |
| pseudouridine synthase | DD563_01640 | Not Available | Negative | 332886 - 333431 | 20249.4 |
| sulfurtransferase | DD563_01645 | Not Available | Negative | 333461 - 334060 | 21164.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
