Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme lyase nrfefg subunit nrfe | DD563_01545 | Not Available | Positive | 309771 - 311750 | 71700.1 |
| cytochrome c biogenesis protein ccda | DD563_01550 | Not Available | Positive | 311747 - 312196 | 16330.6 |
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase | DD563_01555 | Not Available | Positive | 312268 - 313047 | 27793.2 |
| slc13 family permease | DD563_01565 | Not Available | Positive | 314724 - 316496 | 62108.0 |
| datp pyrophosphohydrolase | DD563_01570 | Not Available | Negative | 316622 - 318400 | 63048.1 |
| eama family transporter | DD563_01575 | Not Available | Negative | 318417 - 319310 | 31622.7 |
| metallophosphoesterase | DD563_01580 | Not Available | Negative | 319352 - 320164 | 28458.5 |
| oxidase | DD563_01585 | Not Available | Negative | 320498 - 321151 | 25199.1 |
| citrate (si)-synthase | DD563_01590 | Not Available | Negative | 321240 - 322535 | 48406.0 |
| glutamate--trna ligase | DD563_01595 | Not Available | Negative | 322610 - 324016 | 51092.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
