Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_01495 | Not Available | Negative | 301422 - 301697 | 9549.69 |
| peptide chain release factor 1 | DD563_01500 | Not Available | Positive | 301777 - 302829 | 38620.1 |
| peptide chain release factor n(5)-glutamine methyltransferase | DD563_01505 | Not Available | Positive | 302895 - 303659 | 26985.3 |
| duf4167 domain-containing protein | DD563_01510 | Not Available | Positive | 303875 - 304489 | 22985.0 |
| lysr family transcriptional regulator | DD563_01515 | Not Available | Negative | 304798 - 305703 | 34016.2 |
| glutamate racemase | DD563_01520 | Not Available | Positive | 306043 - 306855 | 29077.9 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DD563_01525 | Not Available | Positive | 306931 - 307959 | 36584.0 |
| cytochrome c maturation protein ccme | DD563_01530 | Not Available | Positive | 307978 - 308445 | 16554.7 |
| peptidoglycan-binding protein | DD563_01535 | Not Available | Positive | 308511 - 309122 | 22177.4 |
| carboxylesterase | DD563_01540 | Not Available | Positive | 309113 - 309679 | 20706.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
