Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_01445 | Not Available | Positive | 291879 - 292412 | 18958.8 |
| bola family transcriptional regulator | DD563_01450 | Not Available | Positive | 292493 - 292729 | 8414.01 |
| grx4 family monothiol glutaredoxin | DD563_01455 | Not Available | Positive | 292775 - 293137 | 13178.7 |
| phosphoribosylformylglycinamidine synthase subunit purl | DD563_01460 | Not Available | Negative | 293400 - 295565 | 76166.5 |
| plp-dependent lyase/thiolase | DD563_01465 | Not Available | Positive | 295725 - 296753 | 35254.0 |
| peptidase m24 | DD563_01470 | Not Available | Positive | 296762 - 297910 | 40351.5 |
| nucleoside triphosphate pyrophosphohydrolase | DD563_01475 | Not Available | Negative | 297907 - 298716 | 29619.9 |
| amidohydrolase | DD563_01480 | Not Available | Positive | 298781 - 299944 | 41256.9 |
| agmatinase | DD563_01485 | Not Available | Positive | 300025 - 300990 | 34364.7 |
| duf1499 domain-containing protein | DD563_01490 | Not Available | Positive | 301188 - 301487 | 10610.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
