Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate metabolism transcriptional regulator phnf | DD563_15155 | Not Available | Positive | 3087384 - 3088103 | 25760.7 |
| arsr family transcriptional regulator | DD563_15160 | Not Available | Positive | 3088251 - 3089099 | 31245.2 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DD563_15165 | Not Available | Positive | 3089096 - 3090094 | 36022.1 |
| mfs transporter | DD563_15170 | Not Available | Positive | 3090091 - 3091359 | 44301.2 |
| acyltransferase | DD563_15175 | Not Available | Negative | 3091375 - 3092247 | 32081.5 |
| chloramphenicol acetyltransferase | DD563_15180 | Not Available | Negative | 3092318 - 3092947 | 23778.0 |
| short-chain dehydrogenase | DD563_15185 | Not Available | Negative | 3092944 - 3093441 | 17803.2 |
| phosphonate abc transporter, permease protein phne | DD563_15190 | Not Available | Negative | 3093441 - 3094754 | 48677.8 |
| phosphonate abc transporter, permease protein phne | DD563_15195 | Not Available | Negative | 3094751 - 3095626 | 31404.6 |
| phosphonate abc transporter substrate-binding protein | DD563_15200 | Not Available | Negative | 3095693 - 3096604 | 31949.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
