Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_01395 | Not Available | Positive | 279683 - 280162 | 17155.4 |
| nadh-quinone oxidoreductase subunit nuok | DD563_01400 | Not Available | Positive | 280214 - 280519 | 10814.8 |
| nadh-quinone oxidoreductase subunit l | DD563_01405 | Not Available | Positive | 280524 - 282665 | 78084.3 |
| nadh-quinone oxidoreductase subunit m | DD563_01410 | Not Available | Positive | 282665 - 284212 | 56503.8 |
| nadh-quinone oxidoreductase subunit nuon | DD563_01415 | Not Available | Positive | 284227 - 285669 | 50967.8 |
| biotin--[acetyl-coa-carboxylase] ligase | DD563_01420 | Not Available | Positive | 285704 - 286483 | 27119.3 |
| type iii pantothenate kinase | DD563_01425 | Not Available | Positive | 286467 - 287237 | 27496.2 |
| mbl fold hydrolase | DD563_01430 | Not Available | Positive | 287245 - 288912 | 60299.4 |
| dead/deah box helicase | DD563_01435 | Not Available | Negative | 289030 - 290571 | 55417.2 |
| glycosyltransferase family 2 protein | DD563_01440 | Not Available | Negative | 290776 - 291720 | 35038.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
