Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | DD563_07420 | Not Available | Positive | 1528714 - 1530828 | 74713.3 |
| hypothetical protein | DD563_00015 | Not Available | Negative | 2024 - 2236 | 7928.77 |
| hypothetical protein | DD563_00020 | Not Available | Negative | 2422 - 2649 | 8647.22 |
| hypothetical protein | DD563_00025 | Not Available | Negative | 2653 - 4221 | 56482.3 |
| hypothetical protein | DD563_00030 | Not Available | Negative | 5002 - 5256 | 9142.05 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | DD563_00035 | Not Available | Negative | 5327 - 5968 | 23717.1 |
| class i sam-dependent methyltransferase | DD563_00040 | Not Available | Negative | 6314 - 7087 | 27486.5 |
| hypothetical protein | DD563_00045 | Not Available | Negative | 7121 - 7852 | 26361.7 |
| coproporphyrinogen iii oxidase | DD563_00050 | Not Available | Negative | 7865 - 9367 | 55149.0 |
| hypothetical protein | DD563_00055 | Not Available | Negative | 9453 - 9689 | 7961.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
