Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate metabolism protein phnm | DD563_15105 | Not Available | Negative | 3079846 - 3081015 | 41815.0 |
| phosphonate metabolism protein | DD563_15110 | Not Available | Positive | 3081041 - 3081712 | 24849.1 |
| phosphonate metabolism protein/1,5-bisphosphokinase (prpp-forming) phnn | DD563_15115 | Not Available | Negative | 3081694 - 3082254 | 19983.2 |
| phosphonate c-p lyase system protein phnl | DD563_15120 | Not Available | Negative | 3082251 - 3082934 | 24559.8 |
| phosphonate c-p lyase system protein phnk | DD563_15125 | Not Available | Negative | 3082938 - 3083708 | 27780.6 |
| carbon-phosphorus lyase | DD563_15130 | Not Available | Negative | 3083705 - 3084562 | 31733.6 |
| had family phosphatase | DD563_15135 | Not Available | Negative | 3084559 - 3085158 | 21774.0 |
| carbon-phosphorus lyase complex subunit phni | DD563_15140 | Not Available | Negative | 3085155 - 3086243 | 40033.4 |
| phosphonate c-p lyase system protein phnh | DD563_15145 | Not Available | Negative | 3086245 - 3086847 | 20849.7 |
| phosphonate c-p lyase system protein phng | DD563_15150 | Not Available | Negative | 3086847 - 3087302 | 16328.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
