Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate abc transporter substrate-binding protein | DD563_15045 | Not Available | Positive | 3068187 - 3069170 | 34263.3 |
| c4-dicarboxylate abc transporter permease | DD563_15050 | Not Available | Positive | 3069327 - 3071642 | 81613.2 |
| hypothetical protein | DD563_15055 | Not Available | Positive | 3071969 - 3072169 | 7350.11 |
| hypothetical protein | DD563_15060 | Not Available | Positive | 3072274 - 3072510 | 9013.81 |
| hypothetical protein | DD563_15065 | Not Available | Positive | 3072514 - 3073029 | 19237.0 |
| hypothetical protein | DD563_15080 | Not Available | Negative | 3074484 - 3075764 | 46605.2 |
| phosphonate metabolism protein phnm | DD563_15085 | Not Available | Negative | 3075719 - 3076924 | 43126.8 |
| phosphonate abc transporter, permease protein phne | DD563_15090 | Not Available | Negative | 3077185 - 3078018 | 29212.2 |
| abc transporter | DD563_15095 | Not Available | Negative | 3078011 - 3078862 | 30199.3 |
| phosphonate abc transporter substrate-binding protein | DD563_15100 | Not Available | Negative | 3078822 - 3079691 | 30875.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
