Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_14990 | Not Available | Negative | 3056515 - 3057357 | 31801.0 |
| glycosyl transferase family 2 | DD563_14995 | Not Available | Negative | 3057354 - 3058304 | 35372.9 |
| class i sam-dependent methyltransferase | DD563_15000 | Not Available | Negative | 3058301 - 3059044 | 28007.3 |
| sam-dependent methyltransferase | DD563_15005 | Not Available | Positive | 3059316 - 3060053 | 27673.9 |
| carbamoyl-phosphate synthase subunit l | DD563_15010 | Not Available | Positive | 3060050 - 3061027 | 35873.3 |
| phosphatase | DD563_15015 | Not Available | Positive | 3061005 - 3061685 | 25758.3 |
| glycosylase | DD563_15020 | Not Available | Positive | 3061678 - 3062682 | 38225.1 |
| hypothetical protein | DD563_15025 | Not Available | Positive | 3062679 - 3063635 | 35669.9 |
| sensor histidine kinase | DD563_15035 | Not Available | Positive | 3064759 - 3066633 | 68998.1 |
| fis family transcriptional regulator | DD563_15040 | Not Available | Positive | 3066630 - 3067973 | 48574.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
