Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthesis protein flga | DD563_14940 | Not Available | Negative | 3045820 - 3046131 | 11210.4 |
| galactitol-1-phosphate 5-dehydrogenase | DD563_14945 | Not Available | Negative | 3046144 - 3047130 | 34597.9 |
| gluconate 5-dehydrogenase | DD563_14950 | Not Available | Negative | 3047127 - 3047885 | 26251.1 |
| histidinol dehydrogenase | DD563_14955 | Not Available | Negative | 3047889 - 3049196 | 46408.6 |
| c4-dicarboxylate abc transporter | DD563_14960 | Not Available | Negative | 3049210 - 3050541 | 46519.0 |
| trap transporter permease dctq | DD563_14965 | Not Available | Negative | 3050553 - 3051068 | 20035.7 |
| c4-dicarboxylate abc transporter | DD563_14970 | Not Available | Negative | 3051177 - 3052322 | 40955.6 |
| laci family transcriptional regulator | DD563_14975 | Not Available | Positive | 3052709 - 3053740 | 36731.5 |
| hypothetical protein | DD563_14980 | Not Available | Negative | 3054391 - 3056115 | 61704.3 |
| hypothetical protein | DD563_14985 | Not Available | Negative | 3056112 - 3056504 | 14588.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
