Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_14890 | Not Available | Positive | 3030817 - 3031926 | 39266.6 |
| multidrug transporter acrb | DD563_14895 | Not Available | Positive | 3031923 - 3035006 | 108312.0 |
| glycine cleavage system aminomethyltransferase gcvt | DD563_14900 | Not Available | Positive | 3035790 - 3036911 | 39503.5 |
| glycine cleavage system protein gcvh | DD563_14905 | Not Available | Positive | 3036928 - 3037287 | 12829.1 |
| glycine dehydrogenase (aminomethyl-transferring) | DD563_14910 | Not Available | Positive | 3037304 - 3040147 | 103351.0 |
| acyltransferase | DD563_14915 | Not Available | Negative | 3041070 - 3041933 | 32061.1 |
| universal stress protein | DD563_14920 | Not Available | Negative | 3042061 - 3042468 | 14357.8 |
| putative sulfate exporter family transporter | DD563_14925 | Not Available | Negative | 3042490 - 3043506 | 35303.6 |
| sulfolactate dehydrogenase | DD563_14930 | Not Available | Negative | 3043555 - 3044544 | 33610.4 |
| d-galactarate dehydratase | DD563_14935 | Not Available | Negative | 3044626 - 3045807 | 42536.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
