Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | DD563_14840 | Not Available | Positive | 3021354 - 3022688 | 46773.7 |
| hypothetical protein | DD563_14845 | Not Available | Positive | 3023065 - 3023403 | 12177.5 |
| hypothetical protein | DD563_14850 | Not Available | Positive | 3023807 - 3024019 | 7763.5 |
| enamidase | DD563_14855 | Not Available | Negative | 3024157 - 3025332 | 41470.9 |
| marr family transcriptional regulator | DD563_14860 | Not Available | Positive | 3025577 - 3026002 | 15815.3 |
| 6-hydroxynicotinate reductase | DD563_14865 | Not Available | Positive | 3026394 - 3027884 | 52979.4 |
| hypothetical protein | DD563_14870 | Not Available | Positive | 3027890 - 3028834 | 32967.3 |
| hypothetical protein | DD563_14875 | Not Available | Positive | 3028761 - 3029342 | 20431.6 |
| peptide synthetase | DD563_14880 | Not Available | Positive | 3029339 - 3029923 | 20533.9 |
| hypothetical protein | DD563_14885 | Not Available | Positive | 3030308 - 3030664 | 12839.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
