Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DD563_14790 | Not Available | Positive | 3012983 - 3013870 | 31730.3 |
| spermidine/putrescine abc transporter | DD563_14795 | Not Available | Positive | 3013974 - 3015041 | 38080.8 |
| polyamine abc transporter substrate-binding protein | DD563_14800 | Not Available | Positive | 3015102 - 3016223 | 40588.4 |
| abc transporter permease | DD563_14805 | Not Available | Positive | 3016301 - 3017125 | 30168.6 |
| abc transporter permease | DD563_14810 | Not Available | Positive | 3017122 - 3017931 | 29555.7 |
| transcriptional regulator | DD563_14815 | Not Available | Positive | 3018156 - 3018488 | 11746.2 |
| arsenical-resistance protein | DD563_14820 | Not Available | Positive | 3018498 - 3019565 | 37753.4 |
| arsenate reductase (glutaredoxin) | DD563_14825 | Not Available | Positive | 3019562 - 3019906 | 12241.9 |
| arsenical resistance protein arsh | DD563_14830 | Not Available | Positive | 3019899 - 3020609 | 26956.5 |
| dna-binding response regulator | DD563_14835 | Not Available | Positive | 3020680 - 3021357 | 24186.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
