Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp-binding protein | DD563_14740 | Not Available | Negative | 3003225 - 3004331 | 39356.7 |
| hypothetical protein | DD563_14745 | Not Available | Negative | 3004405 - 3005286 | 30090.2 |
| hypothetical protein | DD563_14750 | Not Available | Negative | 3005277 - 3005936 | 23725.0 |
| zinc transporter | DD563_14755 | Not Available | Negative | 3005990 - 3007093 | 39177.6 |
| fur family transcriptional regulator | DD563_14760 | Not Available | Positive | 3007150 - 3007668 | 18246.8 |
| zinc abc transporter atp-binding protein znuc | DD563_14765 | Not Available | Positive | 3007665 - 3008423 | 26995.6 |
| hypothetical protein | DD563_14770 | Not Available | Positive | 3008423 - 3009217 | 27032.0 |
| amidinotransferase | DD563_14775 | Not Available | Positive | 3009383 - 3010276 | 32594.1 |
| amidinotransferase | DD563_14780 | Not Available | Negative | 3010333 - 3011250 | 33390.0 |
| peptidase m20 | DD563_14785 | Not Available | Negative | 3011266 - 3012846 | 56793.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
