Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine abc transporter permease | DD563_14690 | Not Available | Positive | 2995771 - 2996559 | 28633.3 |
| nitrile hydratase subunit alpha | DD563_14695 | Not Available | Positive | 2996573 - 2997181 | 22356.5 |
| nitrile hydratase subunit beta | DD563_14700 | Not Available | Positive | 2997304 - 2997957 | 23717.0 |
| nitrile hydratase accessory protein | DD563_14705 | Not Available | Positive | 2997944 - 2998324 | 13647.1 |
| oxygen-independent coproporphyrinogen iii oxidase | DD563_14710 | Not Available | Positive | 2998476 - 2999825 | 48866.8 |
| hypothetical protein | DD563_14715 | Not Available | Negative | 2999933 - 3000139 | 7482.12 |
| d-amino acid aminotransferase | DD563_14720 | Not Available | Positive | 3000181 - 3001053 | 31807.2 |
| hypothetical protein | DD563_14725 | Not Available | Negative | 3001110 - 3001388 | 10258.4 |
| duf1826 domain-containing protein | DD563_14730 | Not Available | Negative | 3001385 - 3002020 | 22888.7 |
| 4-hydroxytetrahydrobiopterin dehydratase | DD563_14735 | Not Available | Negative | 3002017 - 3003228 | 44952.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
