Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DD563_14635 | Not Available | Positive | 2986265 - 2987152 | 32671.0 |
| abc transporter permease | DD563_14640 | Not Available | Positive | 2987154 - 2987975 | 30099.4 |
| hypothetical protein | DD563_14645 | Not Available | Positive | 2988070 - 2989440 | 49529.0 |
| hydrolase | DD563_14650 | Not Available | Negative | 2989437 - 2990237 | 27968.4 |
| hypothetical protein | DD563_14655 | Not Available | Negative | 2990254 - 2991060 | 27543.2 |
| hypothetical protein | DD563_14660 | Not Available | Negative | 2991051 - 2991284 | 8221.94 |
| lysr family transcriptional regulator | DD563_14665 | Not Available | Positive | 2991411 - 2992304 | 32196.0 |
| agmatinase | DD563_14670 | Not Available | Positive | 2992399 - 2993349 | 33993.9 |
| polyamine abc transporter atp-binding protein | DD563_14680 | Not Available | Positive | 2994159 - 2994938 | 27906.9 |
| abc transporter permease | DD563_14685 | Not Available | Positive | 2994938 - 2995774 | 30113.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
