Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyhydroxyalkanoate synthesis repressor phar | DD563_14585 | Not Available | Positive | 2976414 - 2976977 | 20941.2 |
| lysr family transcriptional regulator | DD563_14590 | Not Available | Positive | 2976981 - 2977946 | 35234.0 |
| aminotransferase | DD563_14595 | Not Available | Negative | 2977962 - 2979182 | 43740.6 |
| xre family transcriptional regulator | DD563_14600 | Not Available | Negative | 2979293 - 2979853 | 20168.2 |
| 4-aminobutyrate--2-oxoglutarate transaminase | DD563_14605 | Not Available | Positive | 2979997 - 2981274 | 45528.0 |
| hypothetical protein | DD563_14610 | Not Available | Positive | 2981371 - 2981601 | 8050.85 |
| lysr family transcriptional regulator | DD563_14615 | Not Available | Negative | 2981598 - 2982497 | 31922.9 |
| fad-dependent oxidoreductase | DD563_14620 | Not Available | Positive | 2982713 - 2983957 | 45076.4 |
| spermidine/putrescine abc transporter substrate-binding protein | DD563_14625 | Not Available | Positive | 2984066 - 2985106 | 37499.8 |
| polyamine abc transporter atp-binding protein | DD563_14630 | Not Available | Positive | 2985180 - 2986268 | 39462.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
