Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_14535 | Not Available | Negative | 2966197 - 2967051 | 31069.5 |
| hypothetical protein | DD563_14540 | Not Available | Negative | 2967116 - 2967403 | 9681.39 |
| threonine--trna ligase | DD563_14545 | Not Available | Negative | 2967674 - 2969620 | 73905.7 |
| hypothetical protein | DD563_14550 | Not Available | Positive | 2969893 - 2970120 | 8621.32 |
| alpha/beta hydrolase | DD563_14555 | Not Available | Positive | 2970188 - 2970940 | 26950.9 |
| hypothetical protein | DD563_14560 | Not Available | Positive | 2971016 - 2971630 | 23522.9 |
| alpha/beta hydrolase | DD563_14565 | Not Available | Positive | 2971694 - 2972404 | 25658.6 |
| polyhydroxyalkanoate depolymerase | DD563_14570 | Not Available | Negative | 2972460 - 2973746 | 47552.1 |
| class i poly(r)-hydroxyalkanoic acid synthase | DD563_14575 | Not Available | Positive | 2973850 - 2975655 | 66878.4 |
| phasin, phap | DD563_14580 | Not Available | Positive | 2975786 - 2976229 | 15403.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
