Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper-binding protein | DD563_14485 | Not Available | Positive | 2959255 - 2959746 | 17183.6 |
| hypothetical protein | DD563_14490 | Not Available | Negative | 2960020 - 2960391 | 13415.9 |
| elongation factor 4 | DD563_14495 | Not Available | Positive | 2960593 - 2962392 | 66845.6 |
| hypothetical protein | DD563_14500 | Not Available | Positive | 2962701 - 2963120 | 15993.2 |
| ctp synthetase | DD563_14505 | Not Available | Positive | 2963374 - 2963559 | 6384.14 |
| hypothetical protein | DD563_14510 | Not Available | Positive | 2963734 - 2963973 | 8486.19 |
| cold-shock protein | DD563_14515 | Not Available | Negative | 2964162 - 2964368 | 7350.59 |
| arsenate reductase | DD563_14520 | Not Available | Positive | 2964559 - 2964873 | 11110.4 |
| hypothetical protein | DD563_14525 | Not Available | Negative | 2964885 - 2965445 | 20125.9 |
| duf2063 domain-containing protein | DD563_14530 | Not Available | Negative | 2965445 - 2966200 | 26677.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
