Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine transaminase | DD563_14435 | Not Available | Positive | 2947331 - 2948509 | 41324.5 |
| ornithine carbamoyltransferase | DD563_14440 | Not Available | Positive | 2948574 - 2949500 | 34030.7 |
| phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating) | DD563_14445 | Not Available | Positive | 2949460 - 2951004 | 54593.1 |
| atp-dependent helicase hrpb | DD563_14450 | Not Available | Negative | 2951129 - 2953576 | 88376.9 |
| hypothetical protein | DD563_14455 | Not Available | Negative | 2953586 - 2954296 | 25386.5 |
| methylmalonyl co-a mutase-associated gtpase meab | DD563_14460 | Not Available | Positive | 2954394 - 2955371 | 34667.9 |
| hypothetical protein | DD563_14465 | Not Available | Positive | 2955592 - 2955774 | 6771.48 |
| transcriptional regulator | DD563_14470 | Not Available | Negative | 2955967 - 2956299 | 11923.5 |
| multidrug abc transporter atp-binding protein | DD563_14475 | Not Available | Positive | 2956695 - 2958530 | 66961.5 |
| 50s ribosomal protein l28 | DD563_14480 | Not Available | Positive | 2958814 - 2959119 | 10687.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
