Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_14385 | Not Available | Negative | 2938795 - 2939523 | 26141.8 |
| nitroreductase | DD563_14390 | Not Available | Negative | 2939520 - 2940098 | 20663.8 |
| hypothetical protein | DD563_14395 | Not Available | Negative | 2940242 - 2940478 | 8496.07 |
| peptidase m48 | DD563_14400 | Not Available | Positive | 2940589 - 2941317 | 25484.5 |
| hypothetical protein | DD563_14405 | Not Available | Positive | 2941345 - 2941701 | 12774.5 |
| hypothetical protein | DD563_14410 | Not Available | Positive | 2941825 - 2942091 | 9541.28 |
| 30s ribosomal protein s12 methylthiotransferase rimo | DD563_14415 | Not Available | Negative | 2942226 - 2943620 | 50532.1 |
| asma family protein | DD563_14420 | Not Available | Positive | 2943726 - 2945693 | 68598.5 |
| gcra cell cycle regulator | DD563_14425 | Not Available | Negative | 2945721 - 2946308 | 20675.9 |
| multidrug abc transporter permease | DD563_14430 | Not Available | Positive | 2946434 - 2947237 | 28635.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
