Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter | DD563_14335 | Not Available | Positive | 2924856 - 2926541 | 62069.7 |
| carbamoyl phosphate synthase large subunit | DD563_14340 | Not Available | Negative | 2927303 - 2930686 | 122093.0 |
| aminodeoxychorismate synthase component i | DD563_14345 | Not Available | Positive | 2930857 - 2931978 | 39955.9 |
| aspartate--trna ligase | DD563_14350 | Not Available | Positive | 2932064 - 2933839 | 66349.0 |
| gnat family n-acetyltransferase | DD563_14355 | Not Available | Negative | 2933836 - 2934558 | 27251.3 |
| twin-arginine translocation pathway signal | DD563_14360 | Not Available | Negative | 2934622 - 2935821 | 42845.7 |
| duf1800 domain-containing protein | DD563_14365 | Not Available | Negative | 2935825 - 2937201 | 49682.7 |
| response regulator | DD563_14370 | Not Available | Negative | 2937282 - 2937998 | 25383.7 |
| methylmalonyl-coa epimerase | DD563_14375 | Not Available | Positive | 2938165 - 2938569 | 14290.1 |
| duf1467 domain-containing protein | DD563_14380 | Not Available | Positive | 2938569 - 2938868 | 10644.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
