Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit secy | DD563_14285 | Not Available | Positive | 2914570 - 2915940 | 49217.2 |
| adenylate kinase | DD563_14290 | Not Available | Positive | 2915937 - 2916584 | 22738.3 |
| 30s ribosomal protein s13 | DD563_14295 | Not Available | Positive | 2916850 - 2917218 | 13615.7 |
| 30s ribosomal protein s11 | DD563_14300 | Not Available | Positive | 2917234 - 2917623 | 13823.6 |
| dna-directed rna polymerase subunit alpha | DD563_14305 | Not Available | Positive | 2917737 - 2918753 | 37286.5 |
| 50s ribosomal protein l17 | DD563_14310 | Not Available | Positive | 2918914 - 2919339 | 16131.7 |
| aaa family atpase | DD563_14315 | Not Available | Positive | 2919493 - 2920803 | 47561.8 |
| peptide abc transporter substrate-binding protein | DD563_14320 | Not Available | Positive | 2921025 - 2922632 | 58843.9 |
| abc transporter permease | DD563_14325 | Not Available | Positive | 2922821 - 2923777 | 34566.6 |
| abc transporter permease | DD563_14330 | Not Available | Positive | 2923788 - 2924849 | 37510.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
