Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ggdef domain-containing protein | DD563_14185 | Not Available | Positive | 2903956 - 2905050 | 38967.1 |
| 50s ribosomal protein l2 | DD563_14190 | Not Available | Positive | 2905350 - 2906192 | 30471.0 |
| 30s ribosomal protein s19 | DD563_14195 | Not Available | Positive | 2906195 - 2906473 | 10467.6 |
| 50s ribosomal protein l22 | DD563_14200 | Not Available | Positive | 2906477 - 2906857 | 14167.5 |
| 30s ribosomal protein s3 | DD563_14205 | Not Available | Positive | 2906857 - 2907564 | 26403.1 |
| 50s ribosomal protein l16 | DD563_14210 | Not Available | Positive | 2907577 - 2907990 | 15614.4 |
| hypothetical protein | DD563_14215 | Not Available | Positive | 2908147 - 2908473 | 12346.3 |
| hypothetical protein | DD563_14220 | Not Available | Negative | 2908591 - 2909208 | 22828.9 |
| 50s ribosomal protein l29 | DD563_14225 | Not Available | Positive | 2909395 - 2909601 | 7570.08 |
| 30s ribosomal protein s17 | DD563_14230 | Not Available | Positive | 2909614 - 2909844 | 8737.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
