Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3572 domain-containing protein | DD563_14135 | Not Available | Positive | 2894605 - 2894889 | 9730.46 |
| phosphatase | DD563_14140 | Not Available | Positive | 2894886 - 2895587 | 24866.6 |
| eama/rhat family transporter | DD563_14145 | Not Available | Positive | 2895584 - 2896465 | 29881.5 |
| methyltransferase | DD563_14150 | Not Available | Positive | 2896575 - 2898137 | 57289.9 |
| abc transporter permease | DD563_14155 | Not Available | Negative | 2898174 - 2898926 | 26400.5 |
| abc transporter atp-binding protein | DD563_14160 | Not Available | Negative | 2898923 - 2899642 | 25083.4 |
| thiaminase ii | DD563_14165 | Not Available | Negative | 2899639 - 2900313 | 24807.3 |
| abc transporter atp-binding protein | DD563_14170 | Not Available | Negative | 2900316 - 2901251 | 33446.3 |
| hypothetical protein | DD563_14175 | Not Available | Positive | 2901552 - 2903303 | 62184.5 |
| heme no-binding protein | DD563_14180 | Not Available | Positive | 2903369 - 2903956 | 21355.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
