Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_01295 | Not Available | Positive | 265133 - 265405 | 10062.3 |
| nadh-quinone oxidoreductase subunit a | DD563_01300 | Not Available | Positive | 265486 - 265851 | 13830.3 |
| nadh-quinone oxidoreductase subunit b | DD563_01305 | Not Available | Positive | 265842 - 266375 | 19478.6 |
| nadh-quinone oxidoreductase subunit c | DD563_01310 | Not Available | Positive | 266402 - 267013 | 23780.2 |
| nadh-quinone oxidoreductase subunit d | DD563_01315 | Not Available | Positive | 267013 - 268254 | 46719.8 |
| hypothetical protein | DD563_01320 | Not Available | Positive | 268251 - 268970 | 24776.6 |
| fused nadh-quinone oxidoreductase subunit e/endonuclease | DD563_01325 | Not Available | Positive | 269052 - 270239 | 42605.9 |
| hypothetical protein | DD563_01330 | Not Available | Positive | 270283 - 270963 | 23092.7 |
| hypothetical protein | DD563_01335 | Not Available | Positive | 271004 - 271237 | 8363.22 |
| nadh-quinone oxidoreductase subunit f | DD563_01340 | Not Available | Positive | 271242 - 272537 | 47571.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
