Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trigger factor | DD563_14080 | Not Available | Positive | 2883316 - 2884650 | 49438.5 |
| transglycosylase | DD563_14085 | Not Available | Negative | 2884721 - 2885203 | 17966.6 |
| methionine--trna ligase | DD563_14090 | Not Available | Negative | 2885303 - 2887015 | 64037.1 |
| hypothetical protein | DD563_14095 | Not Available | Negative | 2887085 - 2888305 | 42998.4 |
| hypothetical protein | DD563_14100 | Not Available | Negative | 2888384 - 2888962 | 20646.3 |
| aldo/keto reductase | DD563_14105 | Not Available | Positive | 2889210 - 2890253 | 38376.4 |
| hypothetical protein | DD563_14110 | Not Available | Negative | 2890272 - 2891183 | 31888.3 |
| dna mismatch repair protein mutt | DD563_14120 | Not Available | Negative | 2891839 - 2892540 | 25462.2 |
| hypothetical protein | DD563_14125 | Not Available | Negative | 2892566 - 2892973 | 14884.3 |
| diguanylate cyclase response regulator | DD563_14130 | Not Available | Negative | 2893130 - 2894518 | 49597.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
