Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase | DD563_14030 | Not Available | Negative | 2873322 - 2873927 | 23000.8 |
| methylenetetrahydrofolate reductase | DD563_14035 | Not Available | Negative | 2874303 - 2875169 | 30906.8 |
| lysr family transcriptional regulator | DD563_14040 | Not Available | Positive | 2875268 - 2876185 | 34226.8 |
| inositol monophosphatase | DD563_14045 | Not Available | Positive | 2876294 - 2877082 | 28629.2 |
| aldehyde-activating protein | DD563_14050 | Not Available | Negative | 2877133 - 2877489 | 12662.0 |
| rhomboid family intramembrane serine protease | DD563_14055 | Not Available | Negative | 2877486 - 2878229 | 27465.9 |
| bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase | DD563_14060 | Not Available | Negative | 2878261 - 2881692 | 121671.0 |
| proline dehydrogenase transcriptional activator | DD563_14065 | Not Available | Positive | 2881815 - 2882282 | 17315.8 |
| hypothetical protein | DD563_14070 | Not Available | Positive | 2882313 - 2882858 | 20128.0 |
| Trna-leu | Not Available | Not Available | Positive | 2882902 - 2882988 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
