Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s7 | DD563_13830 | Not Available | Positive | 2827440 - 2827910 | 17900.5 |
| elongation factor g | DD563_13835 | Not Available | Positive | 2827938 - 2830061 | 78364.5 |
| elongation factor tu | DD563_13840 | Not Available | Positive | 2830153 - 2831328 | 42903.3 |
| 30s ribosomal protein s10 | DD563_13845 | Not Available | Positive | 2831409 - 2831717 | 11588.1 |
| 50s ribosomal protein l3 | DD563_13850 | Not Available | Positive | 2831731 - 2832573 | 29471.4 |
| 50s ribosomal protein l4 | DD563_13855 | Not Available | Positive | 2832570 - 2833187 | 22119.1 |
| 50s ribosomal protein l23 | DD563_13860 | Not Available | Positive | 2833184 - 2833480 | 10643.9 |
| energy-dependent translational throttle protein etta | DD563_13865 | Not Available | Negative | 2833619 - 2835274 | 61204.6 |
| hypothetical protein | DD563_13870 | Not Available | Negative | 2835339 - 2837213 | 68700.0 |
| nicotinic acid mononucleotide adenylyltransferase | DD563_13875 | Not Available | Positive | 2837305 - 2837916 | 22321.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
