Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol-3-phosphate cytidylyltransferase | DD563_13780 | Not Available | Positive | 2813165 - 2813608 | 16216.6 |
| 50s ribosomal protein l10 | DD563_13785 | Not Available | Positive | 2813894 - 2814412 | 17837.4 |
| 50s ribosomal protein l7/l12 | DD563_13790 | Not Available | Positive | 2814485 - 2814865 | 12979.6 |
| dna-directed rna polymerase subunit beta | DD563_13795 | Not Available | Positive | 2815163 - 2819299 | 153047.0 |
| dna-directed rna polymerase subunit beta' | DD563_13800 | Not Available | Positive | 2819388 - 2823635 | 156116.0 |
| duf1801 domain-containing protein | DD563_13805 | Not Available | Positive | 2823761 - 2824111 | 12844.3 |
| eama family transporter | DD563_13810 | Not Available | Positive | 2824216 - 2825118 | 32591.1 |
| riboflavin synthase subunit beta | DD563_13815 | Not Available | Negative | 2825051 - 2825875 | 31139.8 |
| hypothetical protein | DD563_13820 | Not Available | Negative | 2825894 - 2826715 | 30697.1 |
| 30s ribosomal protein s12 | DD563_13825 | Not Available | Positive | 2827056 - 2827427 | 14022.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
