Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome p450 | DD563_13725 | Not Available | Negative | 2804045 - 2805349 | 47838.7 |
| acyl dehydratase | DD563_13735 | Not Available | Positive | 2806690 - 2807415 | 26510.7 |
| 2-methylfumaryl-coa isomerase | DD563_13740 | Not Available | Positive | 2807412 - 2808653 | 44224.8 |
| Trna-trp | Not Available | Not Available | Positive | 2808727 - 2808802 | Not Available |
| hypothetical protein | DD563_13750 | Not Available | Positive | 2809031 - 2809741 | 26537.2 |
| preprotein translocase subunit sece | DD563_13755 | Not Available | Positive | 2809875 - 2810069 | 7233.13 |
| transcription termination/antitermination protein nusg | DD563_13760 | Not Available | Positive | 2810265 - 2810798 | 20222.2 |
| 50s ribosomal protein l11 | DD563_13765 | Not Available | Positive | 2810938 - 2811363 | 15161.5 |
| 50s ribosomal protein l1 | DD563_13770 | Not Available | Positive | 2811365 - 2812063 | 24026.2 |
| hypothetical protein | DD563_13775 | Not Available | Positive | 2812221 - 2813162 | 35213.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
