Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_13675 | Not Available | Positive | 2794009 - 2794842 | 30281.7 |
| electron transfer flavoprotein subunit alpha | DD563_13680 | Not Available | Negative | 2794897 - 2795823 | 31022.7 |
| electron transfer flavoprotein subunit beta | DD563_13685 | Not Available | Negative | 2795823 - 2796581 | 26865.8 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DD563_13690 | Not Available | Negative | 2796785 - 2797360 | 20954.9 |
| twin transmembrane helix small protein | DD563_13695 | Not Available | Negative | 2797366 - 2797575 | 7613.71 |
| short-chain dehydrogenase | DD563_13700 | Not Available | Negative | 2797655 - 2798485 | 30787.0 |
| hypothetical protein | DD563_13705 | Not Available | Negative | 2798536 - 2799219 | 24076.9 |
| dna topoisomerase iv subunit a | DD563_13710 | Not Available | Positive | 2799359 - 2801668 | 85485.6 |
| duf898 domain-containing protein | DD563_13715 | Not Available | Positive | 2801726 - 2802898 | 42927.3 |
| peptidase m48 | DD563_13720 | Not Available | Positive | 2802898 - 2804022 | 39586.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
