Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate metabolism protein | DD563_13625 | Not Available | Negative | 2785146 - 2785835 | 25242.9 |
| fumarylacetoacetase | DD563_13630 | Not Available | Positive | 2785973 - 2786665 | 24684.6 |
| acyl-coa dehydrogenase | DD563_13635 | Not Available | Negative | 2786732 - 2788420 | 61739.2 |
| hypothetical protein | DD563_13640 | Not Available | Positive | 2788569 - 2789342 | 26566.1 |
| integration host factor subunit beta | DD563_13645 | Not Available | Positive | 2789569 - 2789850 | 10638.8 |
| duf1049 domain-containing protein | DD563_13650 | Not Available | Positive | 2789854 - 2790204 | 12770.8 |
| phosphoribosylanthranilate isomerase | DD563_13655 | Not Available | Positive | 2790212 - 2790868 | 22872.5 |
| class i sam-dependent methyltransferase | DD563_13660 | Not Available | Positive | 2790893 - 2791519 | 22738.2 |
| tryptophan synthase subunit beta | DD563_13665 | Not Available | Positive | 2791629 - 2792858 | 44652.7 |
| 3-hydroxybutyryl-coa dehydrogenase | DD563_13670 | Not Available | Negative | 2792970 - 2793845 | 31833.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
