Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonic acid transferase | DD563_01240 | Not Available | Negative | 255028 - 256326 | 46467.4 |
| gtp 3',8-cyclase moaa | DD563_01245 | Not Available | Negative | 256326 - 257333 | 38280.0 |
| hypothetical protein | DD563_01250 | Not Available | Positive | 257473 - 257784 | 10951.1 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DD563_01255 | Not Available | Negative | 257786 - 259609 | 64838.8 |
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | DD563_01260 | Not Available | Negative | 259609 - 260964 | 47311.6 |
| haloacid dehalogenase | DD563_01265 | Not Available | Positive | 261110 - 261787 | 23777.6 |
| aminotransferase | DD563_01270 | Not Available | Positive | 261842 - 263035 | 42577.3 |
| hypothetical protein | DD563_01275 | Not Available | Positive | 263040 - 263366 | 11580.2 |
| hypothetical protein | DD563_01280 | Not Available | Negative | 263473 - 264096 | 21695.9 |
| glutathione s-transferase family protein | DD563_01285 | Not Available | Positive | 264338 - 264973 | 23049.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
