Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2062 domain-containing protein | DD563_13575 | Not Available | Positive | 2778133 - 2778786 | 24572.6 |
| pyridoxine 5'-phosphate synthase | DD563_13580 | Not Available | Positive | 2778856 - 2779605 | 26713.0 |
| hypothetical protein | DD563_13585 | Not Available | Positive | 2779602 - 2780033 | 15607.6 |
| holo-acp synthase | DD563_13590 | Not Available | Positive | 2780030 - 2780428 | 14576.5 |
| signal peptidase i | DD563_13595 | Not Available | Positive | 2780532 - 2781368 | 30942.8 |
| ribonuclease iii | DD563_13600 | Not Available | Positive | 2781365 - 2782045 | 24064.8 |
| gtpase era | DD563_13605 | Not Available | Positive | 2782281 - 2783189 | 33613.7 |
| duf1491 domain-containing protein | DD563_13610 | Not Available | Positive | 2783233 - 2783565 | 12289.5 |
| dna repair protein reco | DD563_13615 | Not Available | Positive | 2783644 - 2784381 | 26253.8 |
| tetr/acrr family transcriptional regulator | DD563_13620 | Not Available | Negative | 2784495 - 2785055 | 19974.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
