Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_13525 | Not Available | Positive | 2770741 - 2770983 | 8643.95 |
| trimeric intracellular cation channel family protein | DD563_13530 | Not Available | Negative | 2770997 - 2771620 | 21899.4 |
| ribonuclease hi | DD563_13535 | Not Available | Negative | 2771617 - 2772105 | 17660.9 |
| sam-dependent methyltransferase | DD563_13540 | Not Available | Negative | 2772098 - 2772691 | 20807.7 |
| duf3429 domain-containing protein | DD563_13545 | Not Available | Negative | 2772688 - 2773140 | 16154.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DD563_13550 | Not Available | Negative | 2773137 - 2774087 | 34455.5 |
| nyn domain-containing protein | DD563_13555 | Not Available | Negative | 2774208 - 2774780 | 21950.3 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DD563_13560 | Not Available | Positive | 2774933 - 2775505 | 20527.8 |
| dna-directed rna polymerase subunit omega | DD563_13565 | Not Available | Positive | 2775589 - 2775942 | 13103.2 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DD563_13570 | Not Available | Positive | 2775968 - 2778121 | 80717.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
