Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| precorrin-8x methylmutase | DD563_13475 | Not Available | Positive | 2761769 - 2762404 | 21915.4 |
| cobalamin biosynthesis bifunctional protein cbiet | DD563_13480 | Not Available | Positive | 2762401 - 2763612 | 42776.1 |
| precorrin-2 c(20)-methyltransferase | DD563_13485 | Not Available | Positive | 2763674 - 2764375 | 24576.1 |
| precorrin-3b c(17)-methyltransferase | DD563_13490 | Not Available | Positive | 2764366 - 2766171 | 62234.0 |
| precorrin-4 c(11)-methyltransferase | DD563_13495 | Not Available | Positive | 2766203 - 2766973 | 27426.4 |
| hypothetical protein | DD563_13500 | Not Available | Positive | 2767058 - 2767414 | 13357.7 |
| aminotransferase | DD563_13505 | Not Available | Negative | 2767420 - 2768589 | 42714.5 |
| peptide deformylase | DD563_13510 | Not Available | Positive | 2768693 - 2769211 | 19357.6 |
| peptide deformylase | DD563_13515 | Not Available | Positive | 2769217 - 2769711 | 18598.4 |
| methionyl-trna formyltransferase | DD563_13520 | Not Available | Positive | 2769821 - 2770726 | 31467.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
