Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_13375 | Not Available | Positive | 2742530 - 2743012 | 17188.1 |
| gntr family transcriptional regulator | DD563_13380 | Not Available | Negative | 2743019 - 2743786 | 28960.9 |
| hypothetical protein | DD563_13385 | Not Available | Negative | 2743850 - 2744206 | 12705.3 |
| hypothetical protein | DD563_13390 | Not Available | Negative | 2744203 - 2744547 | 12485.9 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DD563_13395 | Not Available | Negative | 2744560 - 2745168 | 22831.8 |
| hypothetical protein | DD563_13400 | Not Available | Positive | 2745313 - 2745693 | 13393.2 |
| cobaltochelatase subunit cobn | DD563_13405 | Not Available | Negative | 2745690 - 2749382 | 132716.0 |
| gnat family n-acetyltransferase | DD563_13410 | Not Available | Negative | 2749449 - 2749901 | 16638.0 |
| cobalamin biosynthesis protein cobw | DD563_13415 | Not Available | Negative | 2749901 - 2751016 | 40417.6 |
| hypothetical protein | DD563_13420 | Not Available | Positive | 2751089 - 2751415 | 11416.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
