Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DD563_13325 | Not Available | Positive | 2732156 - 2733106 | 34210.1 |
| duf465 domain-containing protein | DD563_13330 | Not Available | Negative | 2733114 - 2733284 | 6267.57 |
| hypothetical protein | DD563_13335 | Not Available | Negative | 2733585 - 2733806 | 7987.67 |
| polyprenyl synthetase family protein | DD563_13340 | Not Available | Positive | 2733861 - 2734862 | 36014.8 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DD563_13345 | Not Available | Negative | 2734869 - 2735702 | 28690.6 |
| hypothetical protein | DD563_13350 | Not Available | Negative | 2735733 - 2737451 | 63439.8 |
| electron transfer flavoprotein-ubiquinone oxidoreductase | DD563_13355 | Not Available | Negative | 2737571 - 2739223 | 59412.0 |
| transcription elongation factor grea | DD563_13360 | Not Available | Positive | 2739502 - 2739972 | 17130.3 |
| hypothetical protein | DD563_13365 | Not Available | Positive | 2739986 - 2741041 | 37899.8 |
| zn-dependent hydrolase | DD563_13370 | Not Available | Negative | 2741061 - 2742311 | 44237.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
