Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase accessory protein ccog | DD563_13275 | Not Available | Positive | 2721074 - 2722510 | 54367.8 |
| nitrogen fixation protein fixh | DD563_13280 | Not Available | Positive | 2722510 - 2722989 | 17379.6 |
| cadmium-translocating p-type atpase | DD563_13285 | Not Available | Positive | 2722986 - 2725178 | 75803.7 |
| cbb3-type cytochrome oxidase assembly protein ccos | DD563_13290 | Not Available | Positive | 2725175 - 2725333 | 5878.0 |
| glutathione s-transferase family protein | DD563_13295 | Not Available | Negative | 2725357 - 2726304 | 34681.3 |
| d-alanyl-d-alanine carboxypeptidase | DD563_13300 | Not Available | Negative | 2726421 - 2727956 | 54955.4 |
| dna-3-methyladenine glycosylase i | DD563_13305 | Not Available | Negative | 2728159 - 2728731 | 21400.5 |
| eal domain-containing protein | DD563_13310 | Not Available | Positive | 2728822 - 2729664 | 30776.2 |
| acetyl-coa c-acetyltransferase | DD563_13315 | Not Available | Positive | 2729800 - 2730972 | 40538.4 |
| beta-ketoacyl-acp reductase | DD563_13320 | Not Available | Positive | 2731140 - 2731862 | 25333.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
